3D tomography of non adherent living cells
Institut Pasteur & ENSC-CMLA


ACI-NIM FLUTOMY B. Chalmond, coordinator

European Project AUTOMATION S.L. Shorte, coordinator PDF file  

ANR Emergence NIN-AL Cell-Viewer B. Chalmond, coordinateur

CMLA team members Y. Yu, A. Trouvé, B. Le Saux, J. Wang, D. Alessandrini and B. Chalmond

"Prix des ingénieurs de l'année 2005" Call PDF file   Awards url   

Publications

A Bayesian 3D Volume Reconstruction for Confocal Micro-rotation Cell Imaging, with Y.Yu and A. Trouvé,
Medical Image Computing and Computer-Assisted Intervention, MICCAI pp.685-692, 2007. PDF file  

Extended paper:
An Integrated Statistical Approach for Volume Reconstruction from Unregistered Sequential Slices, with Y.Yu, A. Trouvé and J. Wang
Inverse Problems, 24, 4, August 2008.

High-resolution imaging of living cells in flow suspension using axial-tomography: 3D imaging flow cytometry,
with O. Renaud, J. Vina, Y. Yu, C. Machu, A. Trouvé, H. Van der Voort, B. and S.L. Shorte.
Biotechnology Journal, 3, 1, pp. 53-62, 2008.

Deconvolution-interpolation in confocal micro-rotation imaging, with B. Le Saux, Y.Yu, A. Trouvé, O. Renaud and S.L. Shorte
International Symposium on Biomedical Imaging: From Nano to Macro, ISBI pp.685-692, 2008.

A Fast 3D Volume Reconstruction for Confocal Micro-rotation Cell Imaging , with Y.Yu and A. Trouvé
International Conference on BioMedical Engineering and Informatics, pp. BMEI 2008.

Gaussian Multiscale Image Kernel Model : Exact Maximum Likelihood Estimation, with Y.Yu and A. Trouvé , Preprint, 2008.

CONFOCAL MICRO-ROTATION IMAGING: A complete system for quantitative 3D confocal microscope fluorescence imaging using novel tomography method, International Patent, 2008. white paper   

Isotropic high resolution 3D confocal micro-rotation imaging for non-adherent living cells, with B. Le Saux, Y.Yu, A. Trouvé, O. Renaud and S.L. Shorte
Journal of Microscopy, 233, pp.404-416, 2009. PDF file  

Confocal bi-protocol: a new strategy for 3D living cell imaging, with Y.Yu, A. Trouvé, O. Renaud and S.L. Shorte.
Journal of Microscopy, 2010, doi:10.1111/j.1365-2818.2010.03440.x

Confocal bi-protocol software DEMO

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